In this thread
http://vboards.stratics.com/showthread.php?t=124020
Originally Posted by Regine_EAMythic
I thought I had answered that!! I guess I'm growing senile :/
But yeah that bug is fixed and will be in Pub 58. I put it the way it was always meant to be i.e. for completing the secret nest, you will get a random seed among the 3 following options:
1. A fire seed (legacy plants and flowery cactus)
2. A black seed - peculiar seeds only
3. A white seed - peculiar seeds only
The cocoa tree, because it drops seeds, cannot be obtained through the naturalist quest. I had left it up to you guys to decide if you preferred having the black/white cocoa tree but no longer get seed from it. Since there were so few replies to that question, I just left well enough alone